Paramecium caudatum (Q488): Difference between revisions

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Revision as of 14:38, 21 March 2024 Kbseah-wikibase (talk | contribs) (‎Changed claim: interacts with (P19): Candidatus Megaira polyxenophila (Q141)) ← Older edit		Latest revision as of 10:25, 16 July 2024 Kbseah-wikibase (talk | contribs) (‎Removed claim: instance of (P18): taxon (Q2), #quickstatements; #temporary_batch_1721125173068) Tag: Quickstatements [1.0.4]
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		Property / interacts with: Holospora obtusa / qualifier
			method used to identify object: metagenomic DNA sequencing
		Property / interacts with: Holospora obtusa / qualifier
			method used to identify subject: light microscopy
		Property / interacts with: Holospora obtusa / qualifier
			method used to identify subject: microbiological culture
		Property / interacts with: Holospora obtusa / qualifier
			method used to identify subject: phylogenetic marker sequencing
		Property / interacts with: Holospora obtusa / reference
			reference DOI: 10.1111/1574-6968.12577 stated in: Draft genome sequences of three Holospora species (Holospora obtusa, Holospora undulata, and Holospora elegans), endonuclear symbiotic bacteria of the ciliate Paramecium caudatum
		Property / interacts with: Candidatus Megaira polyxenophila / qualifier
			method used to identify subject: light microscopy
		Property / interacts with: Candidatus Megaira polyxenophila / qualifier
			method used to identify subject: phylogenetic marker sequencing
		Property / interacts with: Candidatus Megaira polyxenophila / qualifier
			method used to identify subject: microbiological culture
		Property / interacts with: Candidatus Megaira polyxenophila / reference
			reference DOI: 10.1038/s41598-018-37629-w stated in: Diversity and environmental distribution of the cosmopolitan endosymbiont Candidatus Megaira
Property / interacts with: Candidatus Megaira polyxenophila / reference
	reference DOI: 10.1038/s41598-018-37629-w
Property / instance of
	taxon
Property / instance of: taxon / rank
	Normal rank
		Property / interacts with
			Caedimonas varicaedens
		Property / interacts with: Caedimonas varicaedens / rank
			Normal rank
		Property / interacts with: Caedimonas varicaedens / qualifier
			subject body part: macronucleus
		Property / interacts with: Caedimonas varicaedens / qualifier
			interaction type: acquires the killer trait from
		Property / interacts with: Caedimonas varicaedens / qualifier
			method used to identify object: fluorescence in situ hybridization
		Property / interacts with: Caedimonas varicaedens / qualifier
			method used to identify object: phylogenetic marker sequencing
		Property / interacts with: Caedimonas varicaedens / reference
			reference DOI: 10.1007/978-3-540-92677-1_9 stated in: The Killer Effect of Paramecium and Its Causative Agents
		Property / interacts with: Caedimonas varicaedens / reference
			reference DOI: 10.1016/j.syapm.2018.01.005 stated in: Phylogenetic relationships among endosymbiotic R-body producer: Bacteria providing their host the killer trait.
		Property / interacts with
			Holospora undulata
		Property / interacts with: Holospora undulata / rank
			Normal rank
		Property / interacts with: Holospora undulata / qualifier
			subject body part: micronucleus
		Property / interacts with: Holospora undulata / qualifier
			method used to identify object: metagenomic DNA sequencing
		Property / interacts with: Holospora undulata / qualifier
			method used to identify object: fluorescence in situ hybridization
		Property / interacts with: Holospora undulata / reference
			reference DOI: 10.1128/genomea.00664-13 stated in: Draft Genome Sequence of Holospora undulata Strain HU1, a Micronucleus-Specific Symbiont of the Ciliate Paramecium caudatum
		Property / interacts with: Holospora undulata / reference
			reference DOI: 10.1111/1574-6968.12577 stated in: Draft genome sequences of three Holospora species (Holospora obtusa, Holospora undulata, and Holospora elegans), endonuclear symbiotic bacteria of the ciliate Paramecium caudatum
		Property / interacts with: Holospora undulata / reference
			reference DOI: 10.1016/S0932-4739(96)80072-1 stated in: Holospora species infecting the nuclei of Paramecium appear to belong into two groups of bacteria
		Property / interacts with
			Holospora elegans
		Property / interacts with: Holospora elegans / rank
			Normal rank
		Property / interacts with: Holospora elegans / qualifier
			subject body part: micronucleus
		Property / interacts with: Holospora elegans / qualifier
			method used to identify object: metagenomic DNA sequencing
		Property / interacts with: Holospora elegans / qualifier
			method used to identify object: fluorescence in situ hybridization
		Property / interacts with: Holospora elegans / reference
			reference DOI: 10.1111/1574-6968.12577 stated in: Draft genome sequences of three Holospora species (Holospora obtusa, Holospora undulata, and Holospora elegans), endonuclear symbiotic bacteria of the ciliate Paramecium caudatum
		Property / interacts with: Holospora elegans / reference
			reference DOI: 10.1016/S0932-4739(96)80072-1 stated in: Holospora species infecting the nuclei of Paramecium appear to belong into two groups of bacteria
		Property / interacts with
			Holospora recta
		Property / interacts with: Holospora recta / rank
			Normal rank
		Property / interacts with: Holospora recta / qualifier
			subject body part: micronucleus
		Property / interacts with: Holospora recta / reference
			reference DOI: 10.1016/S0932-4739(96)80072-1 stated in: Holospora species infecting the nuclei of Paramecium appear to belong into two groups of bacteria
		Property / interacts with
			Preeria caryophila
		Property / interacts with: Preeria caryophila / rank
			Normal rank
		Property / interacts with: Preeria caryophila / qualifier
			subject body part: macronucleus
		Property / interacts with: Preeria caryophila / reference
			reference DOI: 10.1016/S0932-4739(96)80072-1 stated in: Holospora species infecting the nuclei of Paramecium appear to belong into two groups of bacteria
		Property / interacts with
			Pseudolyticum multiflagellatum
		Property / interacts with: Pseudolyticum multiflagellatum / rank
			Normal rank
		Property / interacts with: Pseudolyticum multiflagellatum / qualifier
			subject body part: cytoplasm
		Property / interacts with: Pseudolyticum multiflagellatum / qualifier
			method used to identify object: fluorescence in situ hybridization
		Property / interacts with: Pseudolyticum multiflagellatum / qualifier
			method used to identify object: phylogenetic marker sequencing
		Property / interacts with: Pseudolyticum multiflagellatum / qualifier
			method used to identify subject: microbiological culture
		Property / interacts with: Pseudolyticum multiflagellatum / qualifier
			free text note: previously described by morphology only (English)
		Property / interacts with: Pseudolyticum multiflagellatum / reference
			reference DOI: 10.3390/d15080924 stated in: Phenotypic Polymorphism in Two Endosymbiotic Bacteria of the Ciliate Paramecium: Pseudolyticum multiflagellatum and “Ca. Megaira venefica”
		Property / interacts with
			Nonospora macronucleata
		Property / interacts with: Nonospora macronucleata / rank
			Normal rank
		Property / interacts with: Nonospora macronucleata / qualifier
			subject body part: macronucleus
		Property / interacts with: Nonospora macronucleata / qualifier
			free text note: "weakly infectious" compared to Holospora spp. (English)
		Property / interacts with: Nonospora macronucleata / reference
			stated in: Nonospora macronucleata g.n., sp. n. - A vegetative nucleus symbiont of the ciliate Paramecium caudatum.
		Property / interacts with: Nonospora macronucleata / reference
			reference DOI: 10.1111/j.1550-7408.2004.tb00388.x stated in: Co-infection of the macronucleus of Paramecium caudatum by free-living bacteria together with the infectious Holospora obtusa
		Property / instance of
			formally named taxon
		Property / instance of: formally named taxon / rank
			Normal rank
		Property / environmental system of origin
			freshwater lake biome
		Property / environmental system of origin: freshwater lake biome / rank
			Normal rank
		Property / environmental system of origin: freshwater lake biome / reference
			reference DOI: 10.1371/journal.pone.0072581 stated in: 'Candidatus Megaira polyxenophila' gen. nov. sp. nov.: considerations on evolutionary history host range and shift of early divergent rickettsiae
		Property / environmental material of origin
			fresh water
		Property / environmental material of origin: fresh water / rank
			Normal rank
		Property / environmental material of origin: fresh water / reference
			reference DOI: 10.1371/journal.pone.0072581 stated in: 'Candidatus Megaira polyxenophila' gen. nov. sp. nov.: considerations on evolutionary history host range and shift of early divergent rickettsiae
		Property / environmental material of origin
			waste water
		Property / environmental material of origin: waste water / rank
			Normal rank
		Property / environmental material of origin: waste water / reference
			reference DOI: 10.1038/s41598-018-37629-w stated in: Diversity and environmental distribution of the cosmopolitan endosymbiont Candidatus Megaira
		Property / environmental material of origin
			pond water
		Property / environmental material of origin: pond water / rank
			Normal rank
		Property / environmental material of origin: pond water / reference
			reference DOI: 10.1038/s41598-018-37629-w stated in: Diversity and environmental distribution of the cosmopolitan endosymbiont Candidatus Megaira
		Property / local environmental context
			pond
		Property / local environmental context: pond / rank
			Normal rank
		Property / local environmental context: pond / reference
			reference DOI: 10.1038/s41598-018-37629-w stated in: Diversity and environmental distribution of the cosmopolitan endosymbiont Candidatus Megaira
		Property / local environmental context
			drainage ditch
		Property / local environmental context: drainage ditch / rank
			Normal rank
		Property / local environmental context: drainage ditch / reference
			reference DOI: 10.1038/s41598-018-37629-w stated in: Diversity and environmental distribution of the cosmopolitan endosymbiont Candidatus Megaira
		Property / local environmental context
			fish farm
		Property / local environmental context: fish farm / rank
			Normal rank
		Property / local environmental context: fish farm / reference
			reference DOI: 10.1038/s41598-018-37629-w stated in: Diversity and environmental distribution of the cosmopolitan endosymbiont Candidatus Megaira
		Property / Wikidata mapping
			http://www.wikidata.org/entity/Q2706492
		Property / Wikidata mapping: http://www.wikidata.org/entity/Q2706492 / rank
			Normal rank

---

Latest revision as of 10:25, 16 July 2024

No description defined

Language	Label	Description	Also known as
English	Paramecium caudatum	No description defined

Statements

instance of

formally named taxon

0 references

interacts with

Legionella pneumophila subsp. pneumophila str. Philadelphia 1

subject body part

symbiont-containing vacuole

method used to identify object

light microscopy

microbiological culture

free text note

in Legionella-containing vacuoles (LCVs). Legionella can experimentally infect Paramecium and inhibit acidification of LCVs, and such persistent intracellular Legionella have been suggested as an example of a 'natural reservoir' of Legionella (English)

3 references

reference DOI

10.1038/srep24322

stated in

Ciliate Paramecium is a natural reservoir of Legionella pneumophila

reference DOI

10.1093/femsec/fiy162

stated in

Identification of novel Legionella genes required for endosymbiosis in Paramecium based on comparative genome analysis with Holospora spp

reference DOI

10.3389/fmicb.2020.596731

stated in

Peculiar Paramecium Hosts Fail to Establish a Stable Intracellular Relationship With Legionella pneumophila

Candidatus Spectririckettsia obscura

subject body part

cytoplasm

method used to identify object

phylogenetic marker sequencing

fluorescence in situ hybridization

free text note

symbionts in two P. caudatum strains collected from Brazil and India have high 16S rRNA sequence identity (99.4%), hence both assigned to the same candidate species (English)

1 reference

reference DOI

10.1007/s00248-018-1243-8

stated in

The Hidden World of Rickettsiales Symbionts: Candidatus Spectririckettsia obscura a Novel Bacterium Found in Brazilian and Indian Paramecium caudatum

Holospora obtusa

subject body part

macronucleus

method used to identify object

phylogenetic marker sequencing

light microscopy

metagenomic DNA sequencing

method used to identify subject

light microscopy

microbiological culture

phylogenetic marker sequencing

2 references

reference DOI

10.3389/fmicb.2016.01704

stated in

Candidatus Gortzia shahrazadis a Novel Endosymbiont of Paramecium multimicronucleatum and a Revision of the Biogeographical Distribution of Holospora-Like Bacteria

reference DOI

10.1111/1574-6968.12577

stated in

Draft genome sequences of three Holospora species (Holospora obtusa, Holospora undulata, and Holospora elegans), endonuclear symbiotic bacteria of the ciliate Paramecium caudatum

Candidatus Megaira polyxenophila

subject body part

cytoplasm

macronucleus

method used to identify object

fluorescence in situ hybridization

phylogenetic marker sequencing

transmission electron microscopy

method used to identify subject

light microscopy

phylogenetic marker sequencing

microbiological culture

2 references

reference DOI

10.1371/journal.pone.0072581

stated in

'Candidatus Megaira polyxenophila' gen. nov. sp. nov.: considerations on evolutionary history host range and shift of early divergent rickettsiae

reference DOI

10.1038/s41598-018-37629-w

stated in

Diversity and environmental distribution of the cosmopolitan endosymbiont Candidatus Megaira

Caedimonas varicaedens

subject body part

macronucleus

interaction type

acquires the killer trait from

method used to identify object

fluorescence in situ hybridization

phylogenetic marker sequencing

2 references

reference DOI

10.1007/978-3-540-92677-1_9

stated in

The Killer Effect of Paramecium and Its Causative Agents

reference DOI

10.1016/j.syapm.2018.01.005

stated in

Phylogenetic relationships among endosymbiotic R-body producer: Bacteria providing their host the killer trait.

Holospora undulata

subject body part

micronucleus

method used to identify object

metagenomic DNA sequencing

fluorescence in situ hybridization

3 references

reference DOI

10.1128/genomea.00664-13

stated in

Draft Genome Sequence of Holospora undulata Strain HU1, a Micronucleus-Specific Symbiont of the Ciliate Paramecium caudatum

reference DOI

10.1111/1574-6968.12577

stated in

Draft genome sequences of three Holospora species (Holospora obtusa, Holospora undulata, and Holospora elegans), endonuclear symbiotic bacteria of the ciliate Paramecium caudatum

reference DOI

10.1016/S0932-4739(96)80072-1

stated in

Holospora species infecting the nuclei of Paramecium appear to belong into two groups of bacteria

Holospora elegans

subject body part

micronucleus

method used to identify object

metagenomic DNA sequencing

fluorescence in situ hybridization

2 references

reference DOI

10.1111/1574-6968.12577

stated in

Draft genome sequences of three Holospora species (Holospora obtusa, Holospora undulata, and Holospora elegans), endonuclear symbiotic bacteria of the ciliate Paramecium caudatum

reference DOI

10.1016/S0932-4739(96)80072-1

stated in

Holospora species infecting the nuclei of Paramecium appear to belong into two groups of bacteria

Holospora recta

subject body part

micronucleus

1 reference

reference DOI

10.1016/S0932-4739(96)80072-1

stated in

Holospora species infecting the nuclei of Paramecium appear to belong into two groups of bacteria

Preeria caryophila

subject body part

macronucleus

1 reference

reference DOI

10.1016/S0932-4739(96)80072-1

stated in

Holospora species infecting the nuclei of Paramecium appear to belong into two groups of bacteria

Pseudolyticum multiflagellatum

subject body part

cytoplasm

method used to identify object

fluorescence in situ hybridization

phylogenetic marker sequencing

method used to identify subject

microbiological culture

free text note

previously described by morphology only (English)

1 reference

reference DOI

10.3390/d15080924

stated in

Phenotypic Polymorphism in Two Endosymbiotic Bacteria of the Ciliate Paramecium: Pseudolyticum multiflagellatum and “Ca. Megaira venefica”

Nonospora macronucleata

subject body part

macronucleus

free text note

"weakly infectious" compared to Holospora spp. (English)

2 references

stated in

Nonospora macronucleata g.n., sp. n. - A vegetative nucleus symbiont of the ciliate Paramecium caudatum.

reference DOI

10.1111/j.1550-7408.2004.tb00388.x

stated in

Co-infection of the macronucleus of Paramecium caudatum by free-living bacteria together with the infectious Holospora obtusa

parent taxon

Paramecium

1 reference

stated in

PR2 version 5.0.0

NCBI taxon ID

5885

0 references

Wikidata mapping

http://www.wikidata.org/entity/Q2706492

0 references

environmental material of origin

fresh water

1 reference

reference DOI

10.1371/journal.pone.0072581

stated in

'Candidatus Megaira polyxenophila' gen. nov. sp. nov.: considerations on evolutionary history host range and shift of early divergent rickettsiae

waste water

1 reference

reference DOI

10.1038/s41598-018-37629-w

stated in

Diversity and environmental distribution of the cosmopolitan endosymbiont Candidatus Megaira

pond water

1 reference

reference DOI

10.1038/s41598-018-37629-w

stated in

Diversity and environmental distribution of the cosmopolitan endosymbiont Candidatus Megaira

environmental system of origin

freshwater lake biome

1 reference

reference DOI

10.1371/journal.pone.0072581

stated in

'Candidatus Megaira polyxenophila' gen. nov. sp. nov.: considerations on evolutionary history host range and shift of early divergent rickettsiae

local environmental context

pond

1 reference

reference DOI

10.1038/s41598-018-37629-w

stated in

Diversity and environmental distribution of the cosmopolitan endosymbiont Candidatus Megaira

drainage ditch

1 reference

reference DOI

10.1038/s41598-018-37629-w

stated in

Diversity and environmental distribution of the cosmopolitan endosymbiont Candidatus Megaira

fish farm

1 reference

reference DOI

10.1038/s41598-018-37629-w

stated in

Diversity and environmental distribution of the cosmopolitan endosymbiont Candidatus Megaira

image

Paramecium caudatum Ehrenberg, 1833.jpg
959 × 728; 110 KB

0 references

 

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