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This project aims to describe symbiotic interactions between protists and prokaryotes as [https://en.wikipedia.org/wiki/Linked_data Linked Open Data]. The database is hosted on [https://www.wikibase.cloud/ wikibase.cloud]. | This project aims to describe symbiotic interactions between protists and prokaryotes as [https://en.wikipedia.org/wiki/Linked_data Linked Open Data]. The database is hosted on [https://www.wikibase.cloud/ wikibase.cloud]. | ||
What can the database be used for? | |||
* Search and browse symbiotic interactions by biological taxonomy, leveraging cross-references to external taxonomies | * Search and browse symbiotic interactions by biological taxonomy, leveraging cross-references to external taxonomies and databases | ||
* Find interactions that | * Find interactions that were described in earlier literature but not yet studied with modern methods | ||
* Programatically find | * Programatically find sequence data, literature, etc. by querying the NCBI databases using linked NCBI taxon IDs | ||
* Share data with [https://www.globalbioticinteractions.org/ GloBI] through periodic data exports | * Share data with [https://www.globalbioticinteractions.org/ GloBI] through periodic data exports | ||
What information do we wish to capture about symbiotic interactions? | |||
* Taxonomy of hosts and symbionts, with links to external databases (primarily NCBI) | * Taxonomy of hosts and symbionts, with links to external databases (primarily NCBI) | ||
* Localization of symbionts in cellular compartments of the host cell, using Gene Ontology terms | * Localization of symbionts in cellular compartments of the host cell, using Gene Ontology terms |