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Project:Main: Difference between revisions
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* Interaction statements: If different aspects of the same symbiosis are described in different publications (e.g. phylogenetic identity vs. interaction type), encode these as separate statements with different qualifier values and references, instead of merging them into one statement where it is not clear which reference is cited in support of which claim. Example: [[Item:Q501]]. Use qualifier P45 "method used to determine interaction type". | * Interaction statements: If different aspects of the same symbiosis are described in different publications (e.g. phylogenetic identity vs. interaction type), encode these as separate statements with different qualifier values and references, instead of merging them into one statement where it is not clear which reference is cited in support of which claim. Example: [[Item:Q501]]. Use qualifier P45 "method used to determine interaction type". | ||
Chores | Chores handled by ppsdb-utils: | ||
* Process backlog of new references | * Process backlog of new references | ||
* Find references that have only DOIs and link them to reference items, or create new reference items for them by Wikidata lookup | * Find references that have only DOIs and link them to reference items, or create new reference items for them by Wikidata lookup | ||
* | * Add formatted citations to reference items; get these from Crossref using the DOI: https://citation.crosscite.org/docs.html | ||
Other chores: | |||
* Add parent taxa for all taxon items | |||
* Ensure that all items have a class | |||
* Find (prokaryote) taxon items that have NCBI taxon ID and a LPSN record, but which are not in Wikidata, and export them to Wikidata | * Find (prokaryote) taxon items that have NCBI taxon ID and a LPSN record, but which are not in Wikidata, and export them to Wikidata | ||
Ideas: | Ideas: | ||
* Better documentation of the data modeling, example workflow for adding a new entry based on information in a publication | * Better documentation of the data modeling, example workflow for adding a new entry based on information in a publication | ||
* Copyright statement, privacy policy | * Copyright statement, privacy policy | ||
NB: The taxonomy version (e.g. PR2 v5.0.0 for eukaryotes) is tagged by linking to a reference item for that particular taxonomy version to the 'parent taxon' statement in a 'stated in' reference. Ideally we should be able to specify which taxonomy version we want to use, if branches get moved around in the future... | NB: The taxonomy version (e.g. PR2 v5.0.0 for eukaryotes) is tagged by linking to a reference item for that particular taxonomy version to the 'parent taxon' statement in a 'stated in' reference. Ideally we should be able to specify which taxonomy version we want to use, if branches get moved around in the future... | ||