Project:SPARQL/examples

List all taxon items

PREFIX pp: <https://ppsdb.wikibase.cloud/entity/>
PREFIX ppt: <https://ppsdb.wikibase.cloud/prop/direct/>

SELECT DISTINCT ?item ?itemLabel WHERE {
  ?item ppt:P18 pp:Q2.
  SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
}

Try it!

List all interaction types and RO mapping if available

PREFIX pp: <https://ppsdb.wikibase.cloud/entity/>
PREFIX ppt: <https://ppsdb.wikibase.cloud/prop/direct/>

SELECT DISTINCT ?item ?itemLabel ?roterm WHERE {
  ?item ppt:P18 pp:Q1.
  OPTIONAL {
    ?item ppt:P16 ?roterm
  }
  SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
}

Try it!

List all body parts and GO mapping if available

PREFIX pp: <https://ppsdb.wikibase.cloud/entity/>
PREFIX ppt: <https://ppsdb.wikibase.cloud/prop/direct/>

SELECT DISTINCT ?item ?itemLabel ?goterm WHERE {
  ?item ppt:P18 pp:Q5.
  OPTIONAL {
    ?item ppt:P17 ?goterm
  }
  SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
}

Try it!

List all interactions, optionally the localization and interaction type

PREFIX pp: <https://ppsdb.wikibase.cloud/entity/>
PREFIX ppt: <https://ppsdb.wikibase.cloud/prop/direct/>
PREFIX pps: <https://ppsdb.wikibase.cloud/prop/>
PREFIX ppss: <https://ppsdb.wikibase.cloud/prop/statement/>
PREFIX ppsq: <https://ppsdb.wikibase.cloud/prop/qualifier/>

SELECT DISTINCT ?host ?hostLabel ?typeLabel ?symbiontLabel ?localizationLabel WHERE {
  ?host pps:P19 ?interaction.
  ?interaction ppss:P19 ?symbiont.
  OPTIONAL {
     ?interaction ppsq:P20 ?localization.
  }
  OPTIONAL {
     ?interaction ppsq:P26 ?type. 
  }
    
  SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
}

Try it!