Project:Main: Difference between revisions

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* Check for statements that should be moved from P19 to P41 "interacts experimentally with"
* Check for statements that should be moved from P19 to P41 "interacts experimentally with"
* Interaction statements: If different aspects of the same symbiosis are described in different publications (e.g. phylogenetic identity vs. interaction type), encode these as separate statements with different qualifier values and references, instead of merging them into one statement where it is not clear which reference is cited in support of which claim. Example: [[Item:Q501]]. Use qualifier P45 "method used to determine interaction type".
* Interaction statements: If different aspects of the same symbiosis are described in different publications (e.g. phylogenetic identity vs. interaction type), encode these as separate statements with different qualifier values and references, instead of merging them into one statement where it is not clear which reference is cited in support of which claim. Example: [[Item:Q501]]. Use qualifier P45 "method used to determine interaction type".
* To deal with taxa that are incertae sedis or not represented in NCBI or Wikidata: add "parent taxon" statements on all taxon items to link them to the next-higher-ranking formal taxon. The parent taxon is then linked to Wikidata. We should then be able to query taxonomically via parent taxa, using the Wikidata taxonomy.


Chores (have to periodically clear them):
Chores (have to periodically clear them):
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* Add statements about metabolism ("phototroph", "nitrogen fixer") to symbiont items?
* Add statements about metabolism ("phototroph", "nitrogen fixer") to symbiont items?
* Dummy taxon for "microbiome" to enable us to add references for microbiome studies?
* Dummy taxon for "microbiome" to enable us to add references for microbiome studies?
* Which environmental material is most appropriate for protists that are symbionts located in digestive tract eQnvironment?
* Which environmental material is most appropriate for protists that are symbionts located in digestive tract environment?
 
Draft annotation guidelines:
* Reference items should always have DOI as an alias, so it that users can easily check with the search bar if it is already used somewhere in the database
* Environmental origin of the organisms using EnvO terms, use guidelines aligned to MIxS: https://github.com/EnvironmentOntology/envo/wiki/ENVO-annotations-for-MIxS-v5