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(Created page with "== Protist Prokaryote Symbiosis Database == Example: Parduczia sp. ("brown ciliate" of Beinart et al.)") |
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== | == Introduction == | ||
Symbiotic interactions between protists and prokaryotes, described with structured data. | |||
Example: [[Item:Q22|Parduczia sp.]] ("brown ciliate" of Beinart et al.) | The aim is to model information about: | ||
* Taxonomy of both hosts and symbionts, with links to external databases (primarily NCBI) | |||
* Localization of symbionts in cellular compartments of the host cell, using Gene Ontology terms | |||
* Nature of biotic interactions, if this is known, using Relation Ontology terms (although there are some limitations in this ontology for describing mutualistic interactions) | |||
* Analytical methods used to study the symbioses | |||
The information was originally collected as part of my [http://nbn-resolving.de/urn:nbn:de:gbv:46-00106172-12 doctoral dissertation] (2017). | |||
Example entry: [[Item:Q22|Parduczia sp.]] ("brown ciliate" of Beinart et al.) | |||
Revision as of 12:28, 15 March 2024
Introduction
Symbiotic interactions between protists and prokaryotes, described with structured data.
The aim is to model information about:
- Taxonomy of both hosts and symbionts, with links to external databases (primarily NCBI)
- Localization of symbionts in cellular compartments of the host cell, using Gene Ontology terms
- Nature of biotic interactions, if this is known, using Relation Ontology terms (although there are some limitations in this ontology for describing mutualistic interactions)
- Analytical methods used to study the symbioses
The information was originally collected as part of my doctoral dissertation (2017).
Example entry: Parduczia sp. ("brown ciliate" of Beinart et al.)