Project:New studies to add: Difference between revisions

Revision as of 09:26, 29 July 2024

Publications that describe symbiotic interactions that are not yet in the database.

Guidelines:

Please list the DOI, or link to the publication full-text if a DOI is not available. A full citation is not necessary as the publication metadata can be retrieved from CrossRef with the DOI.
If necessary, comment briefly on what information in the publication should be added to the database.
Preprints can be listed here, but should only be added as database entries when a peer-reviewed version is published
Remove entries from the list when the database has been updated.

https://agro.icm.edu.pl/agro/element/bwmeta1.element.agro-443d0e0e-63a9-4de1-8030-60c431e77f83 Endosymbionts in Blepharisma japonicum (full text not yet found)
https://doi.org/10.1186/s40168-024-01809-w large scale study of ciliate associated bacteria, from single-ciliate-cell amplification libraries, but doesn't appear to have a table of which bacteria is associated with which ciliate?
https://doi.org/10.1007/978-3-540-92677-1 Endosymbionts in Paramecium book
https://doi.org/10.1007/978-3-540-92677-1_6 Diversity of Endosymbiotic Bacteria in Paramecium - in progress, stopped before section 5
https://doi.org/10.1016/S0932-4739(11)80401-3 Endosymbionts in Paramecium calkinsi
link flagellated endosymbionts in a Frontonia sp.
https://doi.org/10.1093/ismejo/wrae117 general review on ciliate symbioses

https://doi.org/10.3389/fmicb.2017.01188 Mycoplasma and Ureaplasma spp associated with Trichomonas vaginalis, detected by PCR from T. vaginalis cultures

https://doi.org/10.1038/s41598-019-48166-5 bacteria related to sulfur cycling enriched in forams
https://doi.org/10.1016/j.marmicro.2017.09.001 Review of prokaryotes associated with benthic forams, see their table 1
https://doi.org/10.1073/pnas.2200198119 Desulfobacteraceae associated with denitrifying forams Globobulimina spp. (10 species studied, also associated with other bacteria, only metagenomics applied, no FISH or TEM; have to check which MAGs linked to which foram; list of MAG accessions is in their Table S7)
https://doi.org/10.4319/lo.2014.59.6.1879 intracellular bacteria in Ammonia beccarrii under anoxic conditions

https://doi.org/10.1101/2024.05.03.592298 Preprint on facultative methanogen endosymbiont of termite gut protist
https://doi.org/10.1083/jcb.94.3.697 Motility symbiont(s) of a devescovinid flagellate
https://doi.org/10.1371/journal.pone.0233065 ASV study of gut protist associated microbes in Reticulitermes flavipes
https://doi.org/10.1264/jsme2.me17096 Cospeciation of Teranympha and Eucomonympha with spirochaete symbionts
https://doi.org/10.1016/j.ejop.2007.06.004 Spirochaete ectosymbionts of flagellates from Mastotermes darwiniensis
https://doi.org/10.1128/AEM.69.1.625-633.2003 https://doi.org/10.1111/j.1574-6941.2000.tb00750.x Spirochaete ectosymbionts of termite gut flagellates
https://doi.org/10.1111/j.1550-7408.2011.00564.x EM study of symbionts from Barbulanympha and Urinympha from Cryptocercus punctulatus; intracellular localization observed
https://doi.org/10.1128/mbio.00826-24 Endomicrobia comparative genomics, but no information on protist hosts; their table S3 lists bacterial MAGs, but termite host names are in separate Table S1, and no systematic information is provided on the protist hosts
https://doi.org/10.1111/brv.13038 Review of protist symbionts of termites
https://citeseerx.ist.psu.edu/document?repid=rep1&type=pdf&doi=18ac2be7fd364d7871888f06b24b0d15223c7b9f#page=40 TEM study of symbionts in Joenia annectens; the intranuclear symbiont appears not to have been reported elsewhere

https://www.jstor.org/stable/43336527 https://doi.org/10.1111/j.1438-8677.1982.tb01611.x https://doi.org/10.1111/j.1438-8677.1983.tb01673.x Apparent "symbionts" of Chrysostephanosphaera and Lepochromulina in extracellular matrix, described as "refractive bodies" elsewhere (https://doi.org/10.1111/j.1756-1051.1998.tb01545.x), probably not bacteria
Item:Q1104 - Check that examples listed in their table are included in DB
https://www.nature.com/articles/s41598-021-82369-z presence of intracellular bacteria briefly mentioned
https://doi.org/10.1126/science.adk1075 argues that UCYN-A should be considered an organelle, rather than an endosymbiont
https://doi.org/10.1146/annurev-micro-090817-062650 review of cyanobacterial symbionts of microalgae -- the reference numbering in the supplementary table appears to be incorrect, I cannot trace the cited studies
https://doi.org/10.1371/journal.pone.0301343 Potential bacterial symbionts of Alexandrium catenella
https://doi.org/10.3354/ame01440 Heterotrophic ?diazotrophs associated with dinoflagellate-cyanobacteria consortia
https://doi.org/10.1038/s41579-022-00754-5 Add giant viruses?
https://doi.org/10.1016/j.cub.2024.04.085 large scale survey of published eukaryotic genome data for mirusviruses, using major capsid protein sequence as marker; three assemblies found with circular viral genomes

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 * https://phaidra.univie.ac.at/detail/o:1356651.pdf Unpublished Masters thesis on chlamydial intranuclear symbiont of Naegleria clarki ("Pn")
 * https://www.researchgate.net/publication/266144009_A_Coccoid_Bacterial_Parasite_of_Naegleria_sp_Schizopyrenida_Vahlkampfiidae_Inhibits_Cyst_Formation_of_its_Host_but_not_Transformation_to_the_Flagellate_Stage Coccoid bacteria in Naegleria sp.
+* https://wwwnc.cdc.gov/eid/article/14/1/07-0980_article Protochlamydia naegleriophila from Naegleria sp., also known as KNic
 ===Forams===