Project:New studies to add: Difference between revisions
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Remove entries from the list when the database has been updated. | Remove entries from the list when the database has been updated. | ||
Ciliates | |||
* https://doi.org/10.1093/ismejo/wrae125 Methanocorpusculum methanogens in plagiopylean and metopid ciliates | * https://doi.org/10.1093/ismejo/wrae125 Methanocorpusculum methanogens in plagiopylean and metopid ciliates | ||
* https://agro.icm.edu.pl/agro/element/bwmeta1.element.agro-443d0e0e-63a9-4de1-8030-60c431e77f83 Endosymbionts in Blepharisma japonicum (full text not yet found) | * https://agro.icm.edu.pl/agro/element/bwmeta1.element.agro-443d0e0e-63a9-4de1-8030-60c431e77f83 Endosymbionts in Blepharisma japonicum (full text not yet found) | ||
* https://doi.org/10.1098/rspb.2019.0693 Euplotes symbionts | * https://doi.org/10.1098/rspb.2019.0693 Euplotes symbionts | ||
* https://doi.org/10.1186/s40168-024-01809-w large scale study of ciliate associated bacteria, from single-ciliate-cell amplification libraries, but doesn't appear to have a table of which bacteria is associated with which ciliate? | * https://doi.org/10.1186/s40168-024-01809-w large scale study of ciliate associated bacteria, from single-ciliate-cell amplification libraries, but doesn't appear to have a table of which bacteria is associated with which ciliate? | ||
* 10.1007/978-3-540-92677-1 Endosymbionts in Paramecium book | * 10.1007/978-3-540-92677-1 Endosymbionts in Paramecium book | ||
* https:// | * [https://www.researchgate.net/profile/Giulio-Petroni/publication/228509435_Flagellated_endosymbiotic_bacteria_in_a_marine_Frontonia_spOligohymenophorea_Peniculida/links/0deec515f30f45986d000000/Flagellated-endosymbiotic-bacteria-in-a-marine-Frontonia-spOligohymenophorea-Peniculida.pdf link] flagellated endosymbionts in a Frontonia sp. | ||
Trichomonas | |||
* https://doi.org/10.3389/fmicb.2017.01188 Mycoplasma and Ureaplasma spp associated with Trichomonas vaginalis, detected by PCR from T. vaginalis cultures | * https://doi.org/10.3389/fmicb.2017.01188 Mycoplasma and Ureaplasma spp associated with Trichomonas vaginalis, detected by PCR from T. vaginalis cultures | ||
* https://doi.org/10.1371/journal.pone.0110943 Ca. Mycoplasma girerdii associated with Trichomonas vaginalis, originally called "Mycoplasma-like organism" "Mnola" in https://doi.org/10.1093/infdis/jit100 | * https://doi.org/10.1371/journal.pone.0110943 Ca. Mycoplasma girerdii associated with Trichomonas vaginalis, originally called "Mycoplasma-like organism" "Mnola" in https://doi.org/10.1093/infdis/jit100 | ||
* https://doi.org/10.1128/mbio.00918-22 verified intracellular localization of Ca. Mycoplasma girerdii in Trichomonas vaginalis, experimental co-infection with both Mycoplasma spp. | * https://doi.org/10.1128/mbio.00918-22 verified intracellular localization of Ca. Mycoplasma girerdii in Trichomonas vaginalis, experimental co-infection with both Mycoplasma spp. | ||
* [ | |||
Amoebae | |||
* [[Item:Q1742]] (no DOI, original URL defunct, archived at Internet Archive) - morphological description of Pelomyxa spp. symbionts | |||
* https://doi.org/10.1186/s12866-016-0906-1 Acanthamoeba isolates containing chlamydia | * https://doi.org/10.1186/s12866-016-0906-1 Acanthamoeba isolates containing chlamydia | ||
* https://doi.org/10.1371/journal.pone.0095166 Neochlamydia in Acanthamoeba spp. | * https://doi.org/10.1371/journal.pone.0095166 Neochlamydia in Acanthamoeba spp. | ||
* https://doi.org/10. | Forams | ||
* https://doi.org/10.1038/s41598-019-48166-5 bacteria related to sulfur cycling enriched in forams | |||
* https://doi.org/10.1016/j.marmicro.2017.09.001 Review of prokaryotes associated with benthic forams, see their table 1 | * https://doi.org/10.1016/j.marmicro.2017.09.001 Review of prokaryotes associated with benthic forams, see their table 1 | ||
* https://doi.org/10.1073/pnas.2200198119 Desulfobacteraceae associated with denitrifying forams Globobulimina spp. (10 species studied, also associated with other bacteria, have to check which MAGs linked to which foram) | * https://doi.org/10.1073/pnas.2200198119 Desulfobacteraceae associated with denitrifying forams Globobulimina spp. (10 species studied, also associated with other bacteria, have to check which MAGs linked to which foram) | ||
* https://doi.org/10.4319/lo.2014.59.6.1879 intracellular bacteria in Ammonia beccarrii under anoxic conditions | * https://doi.org/10.4319/lo.2014.59.6.1879 intracellular bacteria in Ammonia beccarrii under anoxic conditions | ||
* | |||
Termite gut flagellates | |||
* https://doi.org/10.1101/2024.05.03.592298 Preprint on facultative methanogen endosymbiont of termite gut protist | |||
* https://doi.org/10.1083/jcb.94.3.697 Motility symbiont(s) of a devescovinid flagellate | * https://doi.org/10.1083/jcb.94.3.697 Motility symbiont(s) of a devescovinid flagellate | ||
* https://doi.org/10.1038/s41396-018-0297-4 bacterial ectosymbionts of spirochaete ectosymbionts of oxymonads | * https://doi.org/10.1038/s41396-018-0297-4 bacterial ectosymbionts of spirochaete ectosymbionts of oxymonads | ||
| Line 39: | Line 45: | ||
* https://doi.org/10.1016/j.ejop.2007.06.004 Spirochaete ectosymbionts of flagellates from Mastotermes darwiniensis | * https://doi.org/10.1016/j.ejop.2007.06.004 Spirochaete ectosymbionts of flagellates from Mastotermes darwiniensis | ||
* https://doi.org/10.1111/j.1550-7408.2011.00564.x EM study of symbionts from Barbulanympha and Urinympha from Cryptocercus punctulatus; intracellular localization observed | * https://doi.org/10.1111/j.1550-7408.2011.00564.x EM study of symbionts from Barbulanympha and Urinympha from Cryptocercus punctulatus; intracellular localization observed | ||
Other | |||
* https://www.jstor.org/stable/43336527 https://doi.org/10.1111/j.1438-8677.1982.tb01611.x https://doi.org/10.1111/j.1438-8677.1983.tb01673.x Apparent "symbionts" of Chrysostephanosphaera and Lepochromulina in extracellular matrix, described as "refractive bodies" elsewhere (https://doi.org/10.1111/j.1756-1051.1998.tb01545.x), probably not bacteria | |||
* https://doi.org/10.1128/mbio.00826-24 Endomicrobia comparative genomics, but no information on protist hosts | |||
* [[Item:Q1104]] - Check that examples listed in their table are included in DB | |||
* https://doi.org/10.1186/1471-2180-8-123 Auranticordis quadriverberis, putative intracellular cyanobacteria identified by TEM | |||
* [[Item:Q1156]] - check that examples in their Discussion are included in DB | |||
* https://www.nature.com/articles/s41598-021-82369-z presence of intracellular bacteria briefly mentioned | |||
* https://doi.org/10.1126/science.adk1075 argues that UCYN-A should be considered an organelle, rather than an endosymbiont | |||
* https://doi.org/10.1146/annurev-micro-090817-062650 review of cyanobacterial symbionts of microalgae | |||
* https://doi.org/10.1371/journal.pone.0301343 Potential bacterial symbionts of Alexandrium catenella | |||
Revision as of 11:34, 11 July 2024
Publications that describe symbiotic interactions that are not yet in the database.
Please list the DOI, or link to the publication full-text if a DOI is not available. A full citation is not necessary as the publication metadata can be retrieved from CrossRef with the DOI. If necessary, comment briefly on what information in the publication should be added to the database.
Remove entries from the list when the database has been updated.
Ciliates
- https://doi.org/10.1093/ismejo/wrae125 Methanocorpusculum methanogens in plagiopylean and metopid ciliates
- https://agro.icm.edu.pl/agro/element/bwmeta1.element.agro-443d0e0e-63a9-4de1-8030-60c431e77f83 Endosymbionts in Blepharisma japonicum (full text not yet found)
- https://doi.org/10.1098/rspb.2019.0693 Euplotes symbionts
- https://doi.org/10.1186/s40168-024-01809-w large scale study of ciliate associated bacteria, from single-ciliate-cell amplification libraries, but doesn't appear to have a table of which bacteria is associated with which ciliate?
- 10.1007/978-3-540-92677-1 Endosymbionts in Paramecium book
- link flagellated endosymbionts in a Frontonia sp.
Trichomonas
- https://doi.org/10.3389/fmicb.2017.01188 Mycoplasma and Ureaplasma spp associated with Trichomonas vaginalis, detected by PCR from T. vaginalis cultures
- https://doi.org/10.1371/journal.pone.0110943 Ca. Mycoplasma girerdii associated with Trichomonas vaginalis, originally called "Mycoplasma-like organism" "Mnola" in https://doi.org/10.1093/infdis/jit100
- https://doi.org/10.1128/mbio.00918-22 verified intracellular localization of Ca. Mycoplasma girerdii in Trichomonas vaginalis, experimental co-infection with both Mycoplasma spp.
Amoebae
- Item:Q1742 (no DOI, original URL defunct, archived at Internet Archive) - morphological description of Pelomyxa spp. symbionts
- https://doi.org/10.1186/s12866-016-0906-1 Acanthamoeba isolates containing chlamydia
- https://doi.org/10.1371/journal.pone.0095166 Neochlamydia in Acanthamoeba spp.
Forams
- https://doi.org/10.1038/s41598-019-48166-5 bacteria related to sulfur cycling enriched in forams
- https://doi.org/10.1016/j.marmicro.2017.09.001 Review of prokaryotes associated with benthic forams, see their table 1
- https://doi.org/10.1073/pnas.2200198119 Desulfobacteraceae associated with denitrifying forams Globobulimina spp. (10 species studied, also associated with other bacteria, have to check which MAGs linked to which foram)
- https://doi.org/10.4319/lo.2014.59.6.1879 intracellular bacteria in Ammonia beccarrii under anoxic conditions
Termite gut flagellates
- https://doi.org/10.1101/2024.05.03.592298 Preprint on facultative methanogen endosymbiont of termite gut protist
- https://doi.org/10.1083/jcb.94.3.697 Motility symbiont(s) of a devescovinid flagellate
- https://doi.org/10.1038/s41396-018-0297-4 bacterial ectosymbionts of spirochaete ectosymbionts of oxymonads
- https://doi.org/10.1371/journal.pone.0233065 ASV study of gut protist associated microbes in Reticulitermes flavipes
- https://doi.org/10.1128/aem.69.1.625-633.2003 Spirochaete ectosymbionts of termite gut flagellates
- https://doi.org/10.1111/j.1574-6941.2000.tb00745.x Methanogens associated with Microjoenia and Dinenympha
- https://doi.org/10.1264/jsme2.me17096 Cospeciation of Teranympha and Eucomonympha with spirochaete symbionts
- https://doi.org/10.1016/j.ejop.2007.06.004 Spirochaete ectosymbionts of flagellates from Mastotermes darwiniensis
- https://doi.org/10.1111/j.1550-7408.2011.00564.x EM study of symbionts from Barbulanympha and Urinympha from Cryptocercus punctulatus; intracellular localization observed
Other
- https://www.jstor.org/stable/43336527 https://doi.org/10.1111/j.1438-8677.1982.tb01611.x https://doi.org/10.1111/j.1438-8677.1983.tb01673.x Apparent "symbionts" of Chrysostephanosphaera and Lepochromulina in extracellular matrix, described as "refractive bodies" elsewhere (https://doi.org/10.1111/j.1756-1051.1998.tb01545.x), probably not bacteria
- https://doi.org/10.1128/mbio.00826-24 Endomicrobia comparative genomics, but no information on protist hosts
- Item:Q1104 - Check that examples listed in their table are included in DB
- https://doi.org/10.1186/1471-2180-8-123 Auranticordis quadriverberis, putative intracellular cyanobacteria identified by TEM
- Item:Q1156 - check that examples in their Discussion are included in DB
- https://www.nature.com/articles/s41598-021-82369-z presence of intracellular bacteria briefly mentioned
- https://doi.org/10.1126/science.adk1075 argues that UCYN-A should be considered an organelle, rather than an endosymbiont
- https://doi.org/10.1146/annurev-micro-090817-062650 review of cyanobacterial symbionts of microalgae
- https://doi.org/10.1371/journal.pone.0301343 Potential bacterial symbionts of Alexandrium catenella